Projects

This page contains a list of projects I have worked on. They are a mix of R packages for either research or teaching (or both); websites that contain materials for online courses I teach, an online textbook (in perpetual draft form), and some additional resources. Each project has its dedicated website, where you can learn more.

DSAIDE logo

DSAIDE - Dynamical Systems Approach to Infectious Disease Epidemiology

Teaching
Infectious Disease
Epidemiology
Modeling
R Package

R package that teaches model-based infectious disease epidemiology in a user-friendly way.

DSAIRM logo

DSAIRM - Dynamical Systems Approach to Immune Response Modeling

Teaching
Infectious Disease
Immunology
Modeling
R Package

R package that teaches modeling for within-host infection and immunology.

DSAIRM logo

Flowdiagramr

Research
Visualization
R Package

R package that allows easy creation of high-quality flow diagrams.

IDEMA book logo

Infectious Disease Epidemiology - a Model-based Approach

Teaching
Textbook
Infectious Disease
Epidemiology

An online book (perpetually under construction) covering infectious disease epidemiology from a model-based perspective.

IDEMA course logo

Infectious Disease Epidemiology - a Model-based Approach

Teaching
Course
Infectious Disease
Epidemiology

Complete materials of an online course on infectious disease epidemiology from a model-based perspective.

iblir logo

Introduction to Biostatistics Labs in R (iblir)

Teaching
Data Analysis
R Package

R package containing a collection of online, interactive shiny/learnr based labs that teach basics of biostatistics.

modelbuilder logo

Modelbuilder

Research
Modeling
R Package

R package that allows building and analysis of simulation models without the need to write code.

MDS logo

Modeling and Data Science (MDS) Tools

Teaching
Course
Data Analysis

A set of short introductory tutorials covering a stack of tools I use for teaching and research

MDS template logo

Modeling and Data Science (MDS) project template

Teaching
Research
Data Analysis
The Modeling and Data Science (MDS) Project Template provides a framework for a reproducible modeling or data science (MDS) project. It is set up to facilitate reproducible…
MADA course logo

Modern Applied Data Analysis

Teaching
Course
Data Analysis

Complete materials of an online course on Modern Applied Data Analysis

quizgrader logo

Quizgrader

Teaching
R Package

R package that allows easy administration, submission and grading of online quizzes without the need of a learning management system.

SMI logo

Simulation Modeling in Immunology

Teaching
Course
Infectious Disease
Immunology

Materials of an online course on simulation modeling in immunology.

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